VOLDEN R., VOLLMERS C. Highly Multiplexed Single-Cell Full-Length cDNA Sequencing of human immune cells with 10X Genomics and R2C2. bioRxiv. Jan 2020. [open access]

COLE C., BYRNE A., ADAMS M., VOLDEN R., VOLLMERS C., Complete characterization of the human immune cell transcriptome using accurate full-length cDNA sequencing. Genome Research. April 2020. doi: 10.1101/gr.257188.119.  [unedited biorxiv pdf]


COLE C., BYRNE A., ADAMS M., VOLDEN R., VOLLMERS C. Complete characterization of the human immune cell transcriptome using accurate full-length cDNA sequencing. bioRxiv. [pdf]

BYRNE A., SUPPLE M.A., VOLDEN R., LAIDRE K.L., SHAPIRO B., VOLLMERS C. Depletion of Hemoglobin Transcripts and Long-Read Sequencing Improves the Transcriptome Annotation of the Polar Bear (Ursus maritimus). Frontiers in Genetics 10:643. [open access]


VOLDEN R., PALMER T., BYRNE A., COLE C., SCHMITZ R.J. , GREEN R.E., VOLLMERS C. Improving nanopore read accuracy with the R2C2 method enables the sequencing of highly multiplexed full-length single-cell cDNA. Proceedings of the National Academy of Sciences

COLE, C. BYRNE, A., Beaudin A.E., FORSBERG E.C., VOLLMERS, C. Tn5Prime, a Tn5 based 5′ capture method for single cell RNA-seq. Nucleic Acids Research, gky182 [open access]


BYRNE, A., BEAUDIN, A.E., Olsen, H.E. , Jain, M., Cole, C., Palmer T., DuBois R.M. , Forsberg E.C., Akeson M. & Vollmers C. Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells. Nature Communications. Article number: 16027 (2017) doi:10.1038/ncomms16027 [open access]


COLE, C., VOLDEN, R., DHARMADHIKARI S., SCELFO-DALBEY, C., VOLLMERS, C. 2016. Highly Accurate Sequencing of Full-Length Immune Repertoire Amplicons Using Tn5-Enabled and Molecular Identifier–Guided Amplicon Assembly. J Immunol. pii: 1502563. [open access]


VOLLMERS, C., PENLAND, L., KANBAR, J.N. & QUAKE, S.R. 2015. Novel exons and splice variants in the human antibody heavy chain identified by single cell and single molecule sequencing. Plos One. 10(1) e0117050. (PMCID: PMC4303433) [pdf]


VOLLMERS, C., SIT, R.V., WEINSTEIN, J.A., DEKKER, C.L. & QUAKE, S.R. 2013. Genetic measurement of memory B-cell recall using antibody repertoire sequencing. Proceedings of the National Academy of Sciences, 110(33):13463-13468 (PMCID: PMC3746854) [pdf]


VOLLMERS, C.*, SCHMITZ, R. J.*, NATHANSON, J., YEO, G., ECKER, J. R. & PANDA, S. 2012. Circadian Oscillations of Protein-Coding and Regulatory RNAs in a Highly Dynamic Mammalian Liver Epigenome. Cell Metabolism, 16, 833-845. (PMCID: PMC3541940)[pdf]

HATORI, M.*, VOLLMERS, C.*, ZARRINPAR, A.*, DITACCHIO, L.*, BUSHONG, E. A., GILL, S., LEBLANC, M., CHAIX, A., JOENS, M. & FITZPATRICK, J. A. J. 2012. Time-restricted feeding without reducing caloric intake prevents metabolic diseases in mice fed a high-fat diet. Cell Metabolism. (PMCID: PMC3491655)[pdf]


DITACCHIO, L., LE, H. D., VOLLMERS, C., HATORI, M., WITCHER, M., SECOMBE, J. & PANDA, S. 2011. Histone lysine demethylase JARID1a activates CLOCK-BMAL1 and influences the circadian clock. Science, 333, 1881. (PMCID: PMC3204309)[pdf]


VOLLMERS, C., GILL, S., DITACCHIO, L., PULIVARTHY, S. R., LE, H. D. & PANDA, S. 2009. Time of feeding and the intrinsic circadian clock drive rhythms in hepatic gene expression. Proceedings of the National Academy of Sciences, 106, 21453-21458.(PMCID: PMC2795502)[pdf]

HUGHES, M. E.*, DITACCHIO, L.*, HAYES, K. R., VOLLMERS, C., PULIVARTHY, S., BAGGS, J. E., PANDA, S. & HOGENESCH, J. B. 2009. Harmonics of circadian gene transcription in mammals. PLoS genetics, 5, e1000442. (PMCID: PMC2654964)


VOLLMERS, C., PANDA, S. & DITACCHIO, L. 2008. A high-throughput assay for siRNA-based circadian screens in human U2OS cells. PLoS One, 3, e3457. (PMCID: PMC2565498)[pdf]

HATORI, M., LE, H., VOLLMERS, C., KEDING, S. R., TANAKA, N., SCHMEDT, C., JEGLA, T. & PANDA, S. 2008. Inducible ablation of melanopsin-expressing retinal ganglion cells reveals their central role in non-image forming visual responses. PLoS One, 3, e2451. (PMCID: PMC2396502)